Compiling a test with hdf5 failed

Author: axfe

August undefined, 2024

WebJan 28, 2024 · I found a solution, maybe not quite correct, but it solves my problem. I changed the version from hdf5-1.8.22 to hdf5-1.12.1 and configured with the following command: WebNov 7, 2013 · In the HDF5 list others have reported the same problem with Intel 14, both on Linux and MacOSX. If I disable production, than the tests start to fail when checking the C library (I'm also using icc 14). A test made by kyle kanos (HDF list) with the intel 12.1 show no problems. My experience with the 11.1 version also is positive (no problems).

Parallel HDF5 1.10.2 make check fails - HDF5 - HDF Forum

WebJan 3, 2024 · Make sure you have HDF5 installed via sudo apt-get install libhdf5-dev. However, this doesn't mean that it will be used by hdf5r. which h5cc will probably point you to the conda directory. run locate h5cc in the … WebOct 20, 2015 · 4,289 Views. As Tim indicates, it appears an incompatible module file is being found. You may already be aware of the article Building HDF5* with Intel® compilers; however, noting your use of the 14.0 compiler, once you overcome this module issue you may experience the issue outlined in the Resolving problem when building HDF5* with … cc johnston

“make check” fails when compiling parallel HDF5 with intel …

WebMar 16, 2024 · CMake Error: TRY_RUN () invoked in cross-compiling mode, please set the following cache variables appropriately: TEST_LFS_WORKS_RUN (advanced) For details see /home/jagan/work/code/rk3399/cradlewise/gerrit/br/output/build/libhdf5-hdf5-1_12_0/buildroot-build/TryRunResults.cmake – Performing TEST_LFS_WORKS… no WebDec 2, 2015 · You have two choices, turn off SIP (not recommended) or hack the HDF5 build system to add the needed libraries explicitly. You will in fact need "-L/opt/intel/lib -lifport -lifcore -limf -lsvml -lintlc". You can check whether HDF5 provide a means to … WebFeb 4, 2024 · To report a non-security related issue, please provide: On ubuntu system when I tried cmake .. command on the terminal it fails at 94% percentage because of absence hdf5.h and it cannot pass ctest ... ccj on house

Solved: HDF5 with ifort - Intel Communities

WebOct 30, 2024 · h5repack tests failed with 1 errors. Makefile:1451: recipe for target 'h5repack.sh.chkexe_' failed H5repack error - make check and HDF5 make test in error suggest that these tests are unreliable and to use the -i flag. This does work, but it would be good to have some confirmation from an HDF5 developer if there are plans to fix the tests. WebNov 28, 2024 · Unfortunately this is not working because netcdf configuration does not find the “hdf5.h”. checking hdf5.h usability... no checking hdf5.h presence... no checking for … cc joy starter t.setWebWe would like to show you a description here but the site won’t allow us. ccj on property

"WebFeb 3, 2024 · We can build the HDF5-1.13.1 application successfully. So we suggest you try any of the latest versions of HDF5. We followed the below steps to build the application : " - Compiling a test with hdf5 failed

Compiling a test with hdf5 failed

Parallel HDF5 make check errors (test cache) - HDF Forum

WebApr 21, 2024 · So I believe if you follow the same steps that I have followed then you can solve this problem. I have also attached the o/p screenshot you can also check it out. In your qsub command "qsub -l nodes=4:batch:ppn=24,walltime=24:00:00 -d . run.sh" ppn should be 2 only. I hope this will solve your problem. WebNov 28, 2024 · Unfortunately this is not working because netcdf configuration does not find the “hdf5.h”. checking hdf5.h usability... no checking hdf5.h presence... no checking for hdf5.h... no configure: error: Compiling a test with HDF5 failed. Either hdf5.h cannot be found, or config.log should be checked for other reason.

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WebNov 19, 2024 · mvhulten commented on Nov 19, 2024. Platform: amd64 OpenBSD. Build system: GNU build system (Autotools) t-b mentioned this issue on Jan 9, 2024. CMakeLists.txt: Fix compilation with default settings on debian stretch #1277. mvhulten closed this as completed on Feb 12, 2024. WebNov 16, 2024 · Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

WebMay 29, 2015 · The building failure seems to be Ubuntu specific. I have checked the different dependencies. I tried different workaround: writing the path of hdf5.h directly in … WebMar 16, 2024 · – Performing Other Test HAVE_TM_ZONE - Failed – Performing Other Test HAVE_STRUCT_TM_TM_ZONE - Failed – Performing Other Test HAVE_TIMEZONE - …

WebMar 8, 2015 · 2 Answers. Make sure that for each package you compile and install add the necessary paths to your .profile or .bashrc file. For example, you need to add this after … WebFeb 24, 2024 · I entered a bug report for us to test Parallel HDF5-1.1.0.2 with OpenMPI 3.1.0 compiled with Intel compilers 2024 ver 2.199 under Ubuntu 16.04 LTS. The bug report for your reference is: HDFFV-10507. I also entered a bug report for the SGI mpt question (haiying): HDFFV-10506.

WebSep 8, 2024 · This can happen when an application was compiled by one version of HDF5 but linked with a different version of static or shared HDF5 library. You should recompile the application or check your shared library related settings such as 'LD_LIBRARY_PATH'.

WebFeb 3, 2024 · Some influential environment variables: CC C compiler command CFLAGS C compiler flags LDFLAGS linker flags, e.g. -L if you have libraries in a … cc joy starter bundleWebThe quick instructions for building HDF5 with CMake are: Download the CMake source code (CMake-hdf5-N.N.N.tar.gz or CMake-hdf5.N.N.N.zip). Uncompress it. From the … cc joint of footWebBut 'make check' will probably fail if you use parallel make. This is because historically, there are inter-dependencies between test programs. ... HDF5 and zlib –enable-hdf4-file … cc joint of ankleWebAug 16, 2013 · Subject: [netCDF #NYG-547290]: problems building ncdf4 with hdf5; From: "Unidata netCDF Support" ... error: Compiling a test with HDF5 … ccj on accountWebApr 9, 2024 · I get one failed test, should I open a bug report? Compiled with CPPFLAGS=-DH5_USE_110_API ENABLE_NCZARR=1 and cmake. 149/203 Test #149: tst_h_atts3 .....***Failed 0.02 sec Start 150: tst_h_atts4 ... configure: error: Compiling a test with HDF5 failed. Either hdf5.h cannot be found, or config.log should be checked for other reason. … ccj paid in 30 daysWebApr 21, 2024 · I successfully build the HDF5 library on my account and was able to compile my application with it but when I run my application I get an error message: "error while … bustinskin triathlonWebApr 15, 2024 · I found this in config.log: > configure:17043: checking for hdf5.h > configure:17043: result: no > configure:17050: error: Compiling a test with HDF5 failed. Either hdf5.h > > cannot be found, or config.log should be checked for other reason. It appears you do not have the hdf5 libraries installed. bustinskin weymouth